skia_augmentation
sleap_nn.data.skia_augmentation
¶
Skia-based augmentation functions that operate on uint8 tensors.
This module provides augmentation functions using skia-python that: 1. Match the exact API of sleap_nn.data.augmentation 2. Operate on uint8 tensors throughout (avoiding float32 conversions) 3. Provide ~1.5x faster augmentation compared to Kornia
The implementation uses array-backed Skia surfaces (following the sleap-io pattern) which avoids platform-specific BGR/RGBA pixel format issues. By creating surfaces with an existing numpy array as the backing store, Skia writes directly to that array in the specified color format, eliminating the need for channel swapping.
Usage
from sleap_nn.data.skia_augmentation import ( apply_intensity_augmentation_skia, apply_geometric_augmentation_skia, )
Apply augmentations (uint8 in, uint8 out)¶
image, instances = apply_intensity_augmentation_skia(image, instances, **config) image, instances = apply_geometric_augmentation_skia(image, instances, **config)
Functions:
| Name | Description |
|---|---|
apply_flip_augmentation_skia |
Randomly mirror an image and its keypoints left/right, swapping symmetries. |
apply_geometric_augmentation_skia |
Apply geometric augmentations using Skia. |
apply_intensity_augmentation_skia |
Apply intensity augmentations on uint8 image tensor. |
crop_and_resize_skia |
Crop and resize image regions using Skia. |
apply_flip_augmentation_skia(image, instances, symmetric_inds=None, flip_p=0.0, masks=None)
¶
Randomly mirror an image and its keypoints left/right, swapping symmetries.
When an image is mirrored left/right, left/right symmetric body parts physically
exchange sides, so their slots in the instance array must be swapped to keep
semantic labels correct (e.g. left_paw must remain left_paw). This
mirrors the behavior of SLEAP v1.4's RandomFlipper (horizontal flip).
The flip is applied to the whole sample with probability flip_p (sampled once
per call). Mirroring is exact and lossless (a tensor reverse, no interpolation).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
image
|
Tensor
|
Input tensor of shape |
required |
instances
|
Tensor
|
Keypoints tensor of shape |
required |
symmetric_inds
|
Optional[Sequence[Tuple[int, int]]]
|
Iterable of |
None
|
flip_p
|
float
|
Probability of applying the flip. |
0.0
|
masks
|
Optional[Tensor]
|
Optional segmentation masks of shape |
None
|
Returns:
| Type | Description |
|---|---|
Tuple[Tensor, ...]
|
|
Source code in sleap_nn/data/skia_augmentation.py
apply_geometric_augmentation_skia(image, instances, rotation_min=-15.0, rotation_max=15.0, rotation_p=None, scale_min=0.9, scale_max=1.1, scale_p=None, translate_width=0.02, translate_height=0.02, translate_p=None, affine_p=0.0, erase_scale_min=0.0001, erase_scale_max=0.01, erase_ratio_min=1.0, erase_ratio_max=1.0, erase_p=0.0, mixup_lambda_min=0.01, mixup_lambda_max=0.05, mixup_p=0.0, flip_p=0.0, symmetric_inds=None, masks=None)
¶
Apply geometric augmentations using Skia.
Matches API of sleap_nn.data.augmentation.apply_geometric_augmentation.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
image
|
Tensor
|
Input tensor of shape (1, C, H, W) with dtype uint8 or float32. |
required |
instances
|
Tensor
|
Keypoints tensor of shape (1, n_instances, n_nodes, 2) or (1, n_nodes, 2). |
required |
rotation_min
|
float
|
Minimum rotation angle in degrees. |
-15.0
|
rotation_max
|
float
|
Maximum rotation angle in degrees. |
15.0
|
rotation_p
|
Optional[float]
|
Probability of rotation (independent). None = use affine_p. |
None
|
scale_min
|
float
|
Minimum scale factor. |
0.9
|
scale_max
|
float
|
Maximum scale factor. |
1.1
|
scale_p
|
Optional[float]
|
Probability of scaling (independent). None = use affine_p. |
None
|
translate_width
|
float
|
Max horizontal translation as fraction of width. |
0.02
|
translate_height
|
float
|
Max vertical translation as fraction of height. |
0.02
|
translate_p
|
Optional[float]
|
Probability of translation (independent). None = use affine_p. |
None
|
affine_p
|
float
|
Probability of bundled affine transform. |
0.0
|
erase_scale_min
|
float
|
Min proportion of image to erase. |
0.0001
|
erase_scale_max
|
float
|
Max proportion of image to erase. |
0.01
|
erase_ratio_min
|
float
|
Min aspect ratio of erased area. |
1.0
|
erase_ratio_max
|
float
|
Max aspect ratio of erased area. |
1.0
|
erase_p
|
float
|
Probability of random erasing. |
0.0
|
mixup_lambda_min
|
float
|
Min mixup strength (not implemented). |
0.01
|
mixup_lambda_max
|
float
|
Max mixup strength (not implemented). |
0.05
|
mixup_p
|
float
|
Probability of mixup (not implemented). |
0.0
|
flip_p
|
float
|
Probability of mirroring the sample left/right (with symmetric-node swap). |
0.0
|
symmetric_inds
|
Optional[Sequence[Tuple[int, int]]]
|
Node-index pairs to swap after mirroring (see
|
None
|
masks
|
Optional[Tensor]
|
Optional segmentation masks of shape |
None
|
Returns:
| Type | Description |
|---|---|
Tuple[Tensor, ...]
|
|
Source code in sleap_nn/data/skia_augmentation.py
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apply_intensity_augmentation_skia(image, instances, uniform_noise_min=0.0, uniform_noise_max=0.04, uniform_noise_p=0.0, gaussian_noise_mean=0.0, gaussian_noise_std=0.02, gaussian_noise_p=0.0, contrast_min=0.9, contrast_max=1.1, contrast_p=0.0, brightness_min=0.9, brightness_max=1.1, brightness_p=0.0)
¶
Apply intensity augmentations on uint8 image tensor.
Matches API of sleap_nn.data.augmentation.apply_intensity_augmentation.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
image
|
Tensor
|
Input tensor of shape (1, C, H, W) with dtype uint8 or float32. |
required |
instances
|
Tensor
|
Keypoints tensor (not modified, just passed through). |
required |
uniform_noise_min
|
float
|
Minimum uniform noise (0-1 scale, maps to 0-255). |
0.0
|
uniform_noise_max
|
float
|
Maximum uniform noise (0-1 scale). |
0.04
|
uniform_noise_p
|
float
|
Probability of uniform noise. |
0.0
|
gaussian_noise_mean
|
float
|
Gaussian noise mean (0-1 scale). |
0.0
|
gaussian_noise_std
|
float
|
Gaussian noise std (0-1 scale). |
0.02
|
gaussian_noise_p
|
float
|
Probability of Gaussian noise. |
0.0
|
contrast_min
|
float
|
Minimum contrast factor. |
0.9
|
contrast_max
|
float
|
Maximum contrast factor. |
1.1
|
contrast_p
|
float
|
Probability of contrast adjustment. |
0.0
|
brightness_min
|
float
|
Minimum brightness factor. |
0.9
|
brightness_max
|
float
|
Maximum brightness factor. |
1.1
|
brightness_p
|
float
|
Probability of brightness adjustment. |
0.0
|
Returns:
| Type | Description |
|---|---|
Tuple[Tensor, Tensor]
|
Tuple of (augmented_image, instances). Image dtype matches input. |
Source code in sleap_nn/data/skia_augmentation.py
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crop_and_resize_skia(image, boxes, size)
¶
Crop and resize image regions using Skia.
Replacement for kornia.geometry.transform.crop_and_resize.
Uses array-backed Skia surface pattern from sleap-io to avoid platform-specific BGR/RGBA issues. By creating the surface with an existing numpy array as backing store, Skia writes directly to that array in RGBA format.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
image
|
Tensor
|
Input tensor of shape (1, C, H, W). |
required |
boxes
|
Tensor
|
Bounding boxes tensor of shape (1, 4, 2) with corners: [top-left, top-right, bottom-right, bottom-left]. |
required |
size
|
Tuple[int, int]
|
Output size (height, width). |
required |
Returns:
| Type | Description |
|---|---|
Tensor
|
Cropped and resized tensor of shape (1, C, out_h, out_w). |
Source code in sleap_nn/data/skia_augmentation.py
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